SNP Profiles of AMAZ 3 /2   View Data

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 Key

 1234567891011121314
_Input profile
CCACAACCAAGGGGCCAAGGGGAAAGAC
1._RUQ_91
______GG_______
2._GC-03-022-2-11
CCACAACCTTCCGGGGAACCGGTTCTGT
3._GC-03-022-2-11
CCACAACCTTCCGGGGAACCGGTTCTGT
4._GC-03-022-2-11
CCACAACCTTCCGGGGAACCGGTTCTGT
5._GC-03-022-2-11
CCACAACCTTCCGGGGAACCGGTTCTGT
6._GC-03-022-2-11
CCACAACCTTCCGGGGAACCGGTTCTGT
7._GC-03-022-2-11
CCACAACCTTCCGGGGAACCGGTTCTGT
8._GC-03-022-2-11
CCACAACCTTCCGGGGAACCGGTTCTGT
9._GC-03-022-2-11
CCACAACCTTCCGGGGAACCGGTTCTGT
10._GC-03-022-2-11
CCACAACCTTCCGGGGAACCGGTTCTGT
11._GC-03-022-2-11
CCACAACCTTCCGGGGAACCGGTTCTGT
12._AMAZ_3_/2
_____CCGG_AA_____
13._AMAZ_3_/2
_____CCGG_AA_____
14._AMAZ_3_/2
_____CCGG_AA_____
15._AMAZ_3_/2
_____CCGG_AA_____
16._AMAZ_3_/2
_____CCGG_AA_____
17._AMAZ_3_/2
_____CCGG_AA_____
18._AMAZ_3_/2
_____CCGG_AA_____
19._AMAZ_3_/2
_____CCGG_AA_____
20._AMAZ_3_/2
_____CCGG_AA_____
21._RUQ_91
_____CTGG_AA_____
22._AMAZ_3_/2
_____CCGG_AA_____
23._AMAZ_3_/2
_____CCGG_AA_____
24._RUQ_91
_____CC_GG__AA___
25._GC-03-022-2-11
CCCCAACCTTCCAGGGAACTAGTTTTGG
26._GC-03-022-2-11
CCCCAACCTTCCAGGGAACTAGTTTTGG
27._GC-03-022-2-11
CCCCAACCTTCCAGGGAACTAGTTTTGG
28._GC-03-022-2-11
CCCCAACCTTCCAGGGAACTAGTTTTGG
29._AMAZ_3_/2
_____CCAG_AA_____
30._AMAZ_3_/2
_____CCAG_AA_____
31._AMAZ_3_/2
_____CCAG_AA_____
32._AMAZ_3_/2
_____CCAG_AA_____
 1516171819202122232425262728
_Input profile
AAAAAAAAAAGGAAGGAAAAGGAAACGG
1._RUQ_91
_TT______AA_CC___
2._GC-03-022-2-11
TTTTTTTTAAGG_CCAATTCCAAGTCC
3._GC-03-022-2-11
TTTTTTTTAAGGTTCCAATTCCAAGT_
4._GC-03-022-2-11
TTTTTTTTAAGGTTCCAATTCCAAGTCC
5._GC-03-022-2-11
TTTTTTTTAAGGTTCCAATTCCAAGTCC
6._GC-03-022-2-11
TTTTTTTTAAGGTTCCAATTCCAAGTCC
7._GC-03-022-2-11
TTTTTTTTAAGGTTCCAATTCCAAGTCC
8._GC-03-022-2-11
TTTTTTTTAAGGTTCCAATTCCAAGTCC
9._GC-03-022-2-11
TTTTTTTTAAGGTTCCAATTCCAAGTCC
10._GC-03-022-2-11
TTTTTTTT_GGTTCCAATTCCAAGTCC
11._GC-03-022-2-11
TTTTTTTTAAGGTTCCAATTCC_GTCC
12._AMAZ_3_/2
_TTTT_AA_TT_AATTCCAAGT_
13._AMAZ_3_/2
_TTTT_AA___AATTCCAAGTCC
14._AMAZ_3_/2
_TTTT_AA_TT_AATTCCAAGTCC
15._AMAZ_3_/2
_TTTT_AA_TT_AATTCCAAGTCC
16._AMAZ_3_/2
_TTTT_AA_TT_AATTCCAAGTCC
17._AMAZ_3_/2
_TTTT_AA_TT_AATTCCAAGTCC
18._AMAZ_3_/2
_TTTT_AA_TT_AATTCCAAGTCC
19._AMAZ_3_/2
_TTTT_AA_TT_AATTCCAAGTCC
20._AMAZ_3_/2
_TTTT_AA_TT_AATTCCAAGTCC
21._RUQ_91
_TTTT_AA_TT_AATTCCAGGTCC
22._AMAZ_3_/2
_TTTT___TT_AATTCCAAGTCC
23._AMAZ_3_/2
_TTTT_AA_TT_AATTCC_GTCC
24._RUQ_91
_TT_TT___-AA-CCAAGTCC
25._GC-03-022-2-11
TTGTTTTTAAGGTTCCACTTCCAGGGCT
26._GC-03-022-2-11
TTGTTTTTAAGGTTCCACTTCCAGGGCT
27._GC-03-022-2-11
TTGTTTTTAAGGTTCCACTTCCAGGGCT
28._GC-03-022-2-11
TTGTTTTTAAGGTTCCACTTCCAGGGCT
29._AMAZ_3_/2
_GTTT_AA_TT_ACTTCCAGGGCT
30._AMAZ_3_/2
_GTTT_AA_TT_ACTTCCAGGGCT
31._AMAZ_3_/2
_GTTT_AA_TT_ACTTCCAGGGCT
32._AMAZ_3_/2
_GTTT_AA_TT_ACTTCCAGGGCT
 2930313233343536373839404142
_Input profile
GGATGGAACCAAGGAAGGCCATATGGGG
1._RUQ_91
_____AA______GG_
2._GC-03-022-2-11
CCATGGAAGGAAGGTTGGGGATATGGGG
3._GC-03-022-2-11
CCATGGAAGGAAGGTTGGGGATATGGGG
4._GC-03-022-2-11
CCATGGAAGGAAGGTTGGGGATATGGGG
5._GC-03-022-2-11
CCATGGAAGGAAGGTTGGGGATATGGGG
6._GC-03-022-2-11
CCATGGAAGGAAGGTTGGGGATATGGGG
7._GC-03-022-2-11
CCATGGAAGGAAGGTTGGGGATATGGGG
8._GC-03-022-2-11
CCATGGAAGGAAGGTTGGGGATATGGGG
9._GC-03-022-2-11
CCATGGAAGGAAGGTTGGGGATATGGGG
10._GC-03-022-2-11
CCATGGAAGGAAGGTTGGGGATATGGGG
11._GC-03-022-2-11
CCATGGAAGGAAGGTTGGGGATATGGGG
12._AMAZ_3_/2
CC__AAGGAA_TTGG__AT__
13._AMAZ_3_/2
CC__AAGGAA_TTGG__AT__
14._AMAZ_3_/2
CC__AAGGAA_TTGG__AT__
15._AMAZ_3_/2
CC__AAGGAA_TTGG__AT__
16._AMAZ_3_/2
CC__AAGGAA_TTGG__AT__
17._AMAZ_3_/2
CC__AAGGAA_TTGG__AT__
18._AMAZ_3_/2
CC__AAGGAA_TTGG__AT__
19._AMAZ_3_/2
CC__AAGGAA_TTGG__AT__
20._AMAZ_3_/2
CC__AAGGAA_TTGG__AT__
21._RUQ_91
CC__AAGGAA_TTGG__AT__
22._AMAZ_3_/2
CC__AAGGAA_TTGG__AT__
23._AMAZ_3_/2
CC__AAGGAA_TTGG__AT__
24._RUQ_91
__GGAAGGAA_-____GGGG
25._GC-03-022-2-11
CCTTGGACCCGGGGCTGGGTAATTGGGG
26._GC-03-022-2-11
CCTTGGACCCGGGGCTGGGTAATTGGGG
27._GC-03-022-2-11
CCTTGGACCCGGGGCTGGGTAATTGGGG
28._GC-03-022-2-11
CCTTGGACCCGGGGCTGGGTAATTGGGG
29._AMAZ_3_/2
CC__ACCCGG_CTGG__TT__
30._AMAZ_3_/2
CC__ACCCGG_CTGG__TT__
31._AMAZ_3_/2
CC__ACCCGG_CTGG__TT__
32._AMAZ_3_/2
CC__ACCCGG_CTGG__TT__
 4344454647484950515253545556
_Input profile
ATGGGGGGGGAAGGAACCCCAACCAGCC
1._RUQ_91
_________CC____
2._GC-03-022-2-11
ATCCGGGGGGAACC_CCCCAAGGAG_
3._GC-03-022-2-11
ATCCGGGGGGAACC_CCCCAAGGAG_
4._GC-03-022-2-11
ATCCGGGGGGAACC_CCCCAAGGAG_
5._GC-03-022-2-11
ATCCGGGGGGAACC_CCCCAAGGAG_
6._GC-03-022-2-11
ATCCGGGGGGAACC_CCCCAAGGAG_
7._GC-03-022-2-11
ATCCGGGGGGAACC_CCCCAAGGAG_
8._GC-03-022-2-11
ATCCGGGGGGAACC_CCCCAAGGAG_
9._GC-03-022-2-11
ATCCGGGGGGAACC_CCCCAAGGAG_
10._GC-03-022-2-11
ATCCGGGGGGAACC_CCCCAAGGAG_
11._GC-03-022-2-11
ATCCGGGGGGAACC_CCCCAAGGAG_
12._AMAZ_3_/2
AT___GG____CC_GG__
13._AMAZ_3_/2
AT___GG____CC_GG__
14._AMAZ_3_/2
AT___GG____CC_GG_CC
15._AMAZ_3_/2
AT___GG____CC_GG__
16._AMAZ_3_/2
AT___GG____CC_GG__
17._AMAZ_3_/2
AT___GG____CC_GG__
18._AMAZ_3_/2
AT___GG____CC_GG__
19._AMAZ_3_/2
AT___GG____CC_GG__
20._AMAZ_3_/2
AT___GG____CC_GG__
21._RUQ_91
AT___GG____CC_GG_CC
22._AMAZ_3_/2
AT___GG____CC_GG__
23._AMAZ_3_/2
AT___GG____CC_GG__
24._RUQ_91
AT_____-__CC_-_CC
25._GC-03-022-2-11
ATCCAGAGGGAACG_AACCAGGGGGGG
26._GC-03-022-2-11
ATCCAGAGGGAACG_AACCAGGGGGGG
27._GC-03-022-2-11
ATCCAGAGGGAACG_AACCAGGGGGGG
28._GC-03-022-2-11
ATCCAGAGGGAACG_AACCAGGGGGGG
29._AMAZ_3_/2
AT___GG____CC_GG_GG
30._AMAZ_3_/2
AT___GG____CC_GG_GG
31._AMAZ_3_/2
AT___GG____CC_GG_GG
32._AMAZ_3_/2
AT___GG____CC_GG_GG
 5758596061626364656667686970
_Input profile
AAGGAAGGAAAAACAAAAAAAAAAAACG
1._RUQ_91
AA_TT___GTAA____AATT
2._GC-03-022-2-11
AACCTTCCAAAAGTAATTTTTTTTAACG
3._GC-03-022-2-11
AACCTTCCAAAAGTAATTTTTTTTAACG
4._GC-03-022-2-11
AACCTTCCAAAAGTAATTTTTTTTAACG
5._GC-03-022-2-11
AACCTTCCAAAAGTAATTTTTTTTAACG
6._GC-03-022-2-11
AACCTTCCAAAAGTAATTTTTTTTAACG
7._GC-03-022-2-11
AACCTTCCAAAAGTAATTTTTTTTAACG
8._GC-03-022-2-11
AACCTTCCAAAAGTAATTTTTTTTAACG
9._GC-03-022-2-11
AACCTTCCAAAAGTAATTTTTTTTAACG
10._GC-03-022-2-11
AACCTTCCAAAAGTAATTTTTTTTAACG
11._GC-03-022-2-11
AACCTTCCAAAAGTAATTTTTTTTAACG
12._AMAZ_3_/2
AA__CC__GT_______
13._AMAZ_3_/2
AA__CC__GT_______
14._AMAZ_3_/2
AA__CC__GT_______
15._AMAZ_3_/2
AA__CC__GT_______
16._AMAZ_3_/2
AA__CC__GT_______
17._AMAZ_3_/2
AA__CC__GT_______
18._AMAZ_3_/2
AA__CC__GT_______
19._AMAZ_3_/2
AA__CC__GT_______
20._AMAZ_3_/2
AA__CC__GT_______
21._RUQ_91
AA__CC__GT_______
22._AMAZ_3_/2
AA__CC__GT_______
23._AMAZ_3_/2
AA__CC__GT_______
24._RUQ_91
AA_TTCC__GT-TT__TT-_
25._GC-03-022-2-11
ACCCCCCTAAAAGGGGTTTTGGTTCCCG
26._GC-03-022-2-11
ACCCCCCTAAAAGGGGTTTTGGTTCCCG
27._GC-03-022-2-11
ACCCCCCTAAAAGGGGTTTTGGTTCCCG
28._GC-03-022-2-11
ACCCCCCTAAAAGGGGTTTTGGTTCCCG
29._AMAZ_3_/2
AC__CT__GG_______
30._AMAZ_3_/2
AC__CT__GG_______
31._AMAZ_3_/2
AC__CT__GG_______
32._AMAZ_3_/2
AC__CT__GG_______
 717273747576777879808182  
_Input profile
AGCGGGGGGGCCAGGGGGATAGAAX_XX_X
1._RUQ_91
_CG__GG______AAX_XX_X
2._GC-03-022-2-11
AACGCCCCGGCCCTGGCCATCTAAX_XX_X
3._GC-03-022-2-11
AACGCCCCGGCCCTGGCCATCTAAX_XX_X
4._GC-03-022-2-11
AACGCCCCGGCCCTGGCCATCTAAX_XX_X
5._GC-03-022-2-11
AACGCCCCGGCCCTGGCCATCTAAX_XX_X
6._GC-03-022-2-11
AACGCCCCGGCCCTGGCCATCTAAX_XX_X
7._GC-03-022-2-11
AACGCCCCGGCCCTGGCCATCTAAX_XX_X
8._GC-03-022-2-11
AACGCCCCGGCCCTGGCCATCTAAX_XX_X
9._GC-03-022-2-11
AACGCCCCGGCCCTGGCCATCTAAX_XX_X
10._GC-03-022-2-11
AACGCCCCGGCCCTGGCCATCTAAX_XX_X
11._GC-03-022-2-11
AACGCCCCGGCCCTGGCCATCTAAX_XX_X
12._AMAZ_3_/2
_CGCC___CTGG_ATCTAAX_XX_X
13._AMAZ_3_/2
_CGCC___CTGG_ATCTAAX_XX_X
14._AMAZ_3_/2
_CGCC___CTGG_ATCTAAX_XX_X
15._AMAZ_3_/2
_CGCC___CTGG_ATCTAAX_XX_X
16._AMAZ_3_/2
_CGCC___CTGG_ATCTAAX_XX_X
17._AMAZ_3_/2
_CGCC___CTGG_ATCTAAX_XX_X
18._AMAZ_3_/2
_CGCC___CTGG_ATCTAAX_XX_X
19._AMAZ_3_/2
_CGCC___CTGG_ATCTAAX_XX_X
20._AMAZ_3_/2
_CGCC___CTGG_ATCTAAX_XX_X
21._RUQ_91
_CGCC___CTGG_ATCTAAX_XX_X
22._AMAZ_3_/2
_CGCC___CTGG_ATCTAAX_XX_X
23._AMAZ_3_/2
_CGCC___CTGG_ATCTAAX_XX_X
24._RUQ_91
_-CC_-CC_____AAX_XX_X
25._GC-03-022-2-11
_GGCTCCGGCCCCCGCCAACTAGX_XX_X
26._GC-03-022-2-11
_GGCTCCGGCCCCCGCCAACTAGX_XX_X
27._GC-03-022-2-11
_GGCTCCGGCCCCCGCCAACTAGX_XX_X
28._GC-03-022-2-11
_GGCTCCGGCCCCCGCCAACTAGX_XX_X
29._AMAZ_3_/2
_GGCT___CCCG_AACTAGX_XX_X
30._AMAZ_3_/2
_GGCT___CCCG_AACTAGX_XX_X
31._AMAZ_3_/2
_GGCT___CCCG_AACTAGX_XX_X
32._AMAZ_3_/2
_GGCT___CCCG_AACTAGX_XX_X

Input profile: AMAZ_3_/2 RUQ_91

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._AMAZ_3_/2 RUQ_91

68.8 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._AMAZ_3_/2 GC-03-022-2-11

53.8 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._AMAZ_3_/2 GC-03-022-2-11

53.8 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._AMAZ_3_/2 GC-03-022-2-11

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._AMAZ_3_/2 GC-03-022-2-11

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._AMAZ_3_/2 GC-03-022-2-11

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

8._AMAZ_3_/2 GC-03-022-2-11

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

9._AMAZ_3_/2 GC-03-022-2-11

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

10._AMAZ_3_/2 GC-03-022-2-11

52.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._AMAZ_3_/2 GC-03-022-2-11

52.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

12._AMAZ_3_/2

51.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

13._AMAZ_3_/2

51.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

14._AMAZ_3_/2

51.4 %
35 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

15._AMAZ_3_/2

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

16._AMAZ_3_/2

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

17._AMAZ_3_/2

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

18._AMAZ_3_/2

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

19._AMAZ_3_/2

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

20._AMAZ_3_/2

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

21._AMAZ_3_/2 RUQ_91

50 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._AMAZ_3_/2

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

23._AMAZ_3_/2

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

24._AMAZ_3_/2 RUQ_91

46.4 %
28 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._AMAZ_3_/2 GC-03-022-2-11

38.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._AMAZ_3_/2 GC-03-022-2-11

38.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

27._AMAZ_3_/2 GC-03-022-2-11

38.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

28._AMAZ_3_/2 GC-03-022-2-11

38.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

29._AMAZ_3_/2

34.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

30._AMAZ_3_/2

34.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

31._AMAZ_3_/2

34.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

32._AMAZ_3_/2

34.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998